Protein Protein Docking
AlphaFold3 reproduction, predict protein/nucleic acid/small molecule complexes
Wohlwend et. al
Chai Discovery team
Predicts protein, nucleic acid, and small-molecule complexes. AlphaFold3-level model with strong performance on protein–protein and antibody–antigen interfaces.
Bytedance
Predict protein/nucleic acid/small molecule complexes, matching or surpassing AlphaFold 3
Qiao et. al
Protein-protein docking using inverted AlphaFold
Feng et. al
Rigid body protein-protein docking
Ganea et. al
Binding ddG prediction of protein complexes
Shan et. al
Protein-protein binding affinity prediction for multiple complexes
Qian et. al
Evaluate your docking interface
Basu et. al
Score and rank antibody-antigen complex models by predicted DockQ
Xu et. al
Predict PPI of structures or sequences
Hu et. al
Predict antibody-antigen binding affinity
Jin et al. et. al
Molecular surface interaction fingerprints.
Gainza et. al
Predict DockQ score of a predicted protein structure
Bryant et. al
Scoring function for interprotein interactions in AlphaFold
Dunbrack et. al
Identify interface residues between protein chains using Voronoi tessellation
Steven Grudman et. al